Publications

1.  

Subbannayya Y, Haug M, Pinto SM, Mohanty V, Meås HZ, Flo TH, Prasad TK, Kandasamy RK. The proteomic landscape of resting and activated CD4+ T cells reveal insights into cell differentiation and function. International journal of molecular sciences. 2020 Dec 29;22(1):275.

2.  

Shaikh S, Bhandary YP, Najar MA, Prabhu A, Prasad TK, Gouda MM, Irfan K, Modi PK. In depth mass spectrometry based proteomic approach to explore the effect of curcumin in IL17A mediated alveolar barrier injury.

3.  

Pinto SM, Kim H, Subbannayya Y, Giambelluca M, Bösl K, Kandasamy RK. Dose-dependent phorbol 12-myristate-13-acetate-mediated monocyte-to-macrophage differentiation induces unique proteomic signatures in THP-1 cells. BioRxiv. 2020 Feb 28:2020-02.

4.  

Babu N, Pinto SM, Biswas M, Subbannayya T, Rajappa M, Mohan SV, Advani J, Rajagopalan P, Sathe G, Syed N, Radhakrishna VD. Phosphoproteomic analysis identifies CLK1 as a novel therapeutic target in gastric cancer. Gastric Cancer. 2020 Sep;23(5):796-810.

5.  

Pinto SM, Kim H, Subbannayya Y, Giambelluca M, Bösl K, Kandasamy RK. Dose-dependent phorbol 12-myristate-13-acetate-mediated monocyte-to-macrophage differentiation induces unique proteomic signatures in THP-1 cells. BioRxiv. 2020 Feb 28:2020-02.

6.  

Inala MS, Karthikkeyan G, Pinto SM, Pamidimukkala K. Biological activity of ‘3, 3′, 4′, 5, 7-pentahydroxyflavone isolated from green leafy vegetables of karnataka on three bacterial strains. Biomedical and Pharmacology Journal. 2020 Jun 25;13(2):849-63.

7.  

Rajesh MK, Gangaraj KP, Prabhudas SK, Prasad TK. The complete chloroplast genome data of Areca catechu (Arecaceae). Data in Brief. 2020 Dec 1;33:106444.

8.  

Dagamajalu, S., Vijayakumar, M., Shetty, R., Rex, D. A. B., Narayana Kotimoole, C. and Prasad, T. S. K. (2020). Proteogenomic examination of esophageal squamous cell carcinoma (ESCC)

9.  

Muliyar RK, Chowdappa P, Behera SK, Kasaragod S, Gangaraj KP, Kotimoole CN, Nekrakalaya B, Mohanty V, Sampgod RB, Banerjee G, Das AJ. Assembly and annotation of the nuclear and organellar genomes of a dwarf coconut (Chowghat Green Dwarf) possessing enhanced disease resistance. OMICS: A Journal of Integrative Biology. 2020 Dec 1;24(12):726-42.

10.  

Karthikkeyan G, Pervaje R, Subbannayya Y, Patil AH, Modi PK, Prasad TS. Plant omics: metabolomics and network pharmacology of liquorice, Indian Ayurvedic Medicine Yashtimadhu. OMICS: A Journal of Integrative Biology. 2020 Dec 1;24(12):743-55.

11.  

Karthikkeyan G, Najar MA, Pervaje R, Pervaje SK, Modi PK, Prasad TS. Identification of molecular network associated with neuroprotective effects of Yashtimadhu (Glycyrrhiza glabra L.) by quantitative proteomics of rotenone-induced Parkinson’s disease model. Acs Omega. 2020 Oct 6;5(41):26611-25.

12.  

Yadav R, Parihar RD, Dhiman U, Dhamija P, Upadhyay SK, Imran M, Behera SK, Prasad TK. Docking of fda approved drugs targeting nsp-16, n-protein and main protease of sars-cov-2 as dual inhibitors. Biointerface Res. Appl. Chem. 2020;11(3):9848-61.

13.  

Thoduvayil S, Dhandapani G, Brahma R, Devasahayam Arokia Balaya R, Mangalaparthi KK, Patel K, Kumar M, Tennyson J, Satheeshkumar PK, Kulkarni MJ, Pinto SM. Triton X‐114 fractionated subcellular proteome of Leptospira interrogans shows selective enrichment of pathogenic and outer membrane proteins in the detergent fraction. Proteomics. 2020 Oct;20(19-20):2000170.

14.  

Mangalaparthi KK, Patel K, Khan AA, Manoharan M, Karunakaran C, Murugan S, Gupta R, Gupta R, Khanna-Gupta A, Chaudhuri A, Kumar P. Mutational landscape of esophageal squamous cell carcinoma in an Indian cohort. Frontiers in oncology. 2020 Aug 20;10:1457.

15.  

Gouda MM, Rex DA, Es SP, Modi PK, Chanderasekaran J, Bhandary YP. Proteomics analysis revealed the importance of inflammation-mediated downstream pathways and the protective role of curcumin in bleomycin-induced pulmonary fibrosis in C57BL/6 mice. Journal of Proteome Research. 2020 Jul 3;19(8):2950-63.

16.  

Kasaragod S, Mohanty V, Tyagi A, Behera SK, Patil AH, Pinto SM, Prasad TK, Modi PK, Gowda H. CusVarDB: A tool for building customized sample-specific variant protein database from next-generation sequencing datasets. F1000Research. 2020 Nov 16;9:344.

17.  

Sharma T, Datta KK, Kumar M, Dey G, Khan AA, Mangalaparthi KK, Saharan P, Chinnapparaj S, Aggarwal A, Singla N, Ghosh S. Intracranial aneurysm biomarker candidates identified by a proteome-wide study. OMICS: A Journal of Integrative Biology. 2020 Aug 1;24(8):483-92.

18.  

 Saraf, K. K., Kumaresan, A., Gupta, M. D., Karthikkeyan, G., Prasad, T. S. K., Modi, P. K., Ramesha, K., Jeyakumar, S. and Manimaran, A. (2020). Metabolomics Fingerprinting of Bull Spermatozoa for Identification of Fertility Signature Metabolites. Molecular Reproduction and Development.

1.  

Subbannayya Y, Haug M, Pinto SM, Mohanty V, Meås HZ, Flo TH, Prasad TK, Kandasamy RK. The proteomic landscape of resting and activated CD4+ T cells reveal insights into cell differentiation and function. International journal of molecular sciences. 2020 Dec 29;22(1):275.

2.  

Shaikh S, Bhandary YP, Najar MA, Prabhu A, Prasad TK, Gouda MM, Irfan K, Modi PK. In depth mass spectrometry based proteomic approach to explore the effect of curcumin in IL17A mediated alveolar barrier injury.

3.  

Pinto SM, Kim H, Subbannayya Y, Giambelluca M, Bösl K, Kandasamy RK. Dose-dependent phorbol 12-myristate-13-acetate-mediated monocyte-to-macrophage differentiation induces unique proteomic signatures in THP-1 cells. BioRxiv. 2020 Feb 28:2020-02.

4.  

Babu N, Pinto SM, Biswas M, Subbannayya T, Rajappa M, Mohan SV, Advani J, Rajagopalan P, Sathe G, Syed N, Radhakrishna VD. Phosphoproteomic analysis identifies CLK1 as a novel therapeutic target in gastric cancer. Gastric Cancer. 2020 Sep;23(5):796-810.

5.  

Pinto SM, Kim H, Subbannayya Y, Giambelluca M, Bösl K, Kandasamy RK. Dose-dependent phorbol 12-myristate-13-acetate-mediated monocyte-to-macrophage differentiation induces unique proteomic signatures in THP-1 cells. BioRxiv. 2020 Feb 28:2020-02.

6.  

Inala MS, Karthikkeyan G, Pinto SM, Pamidimukkala K. Biological activity of ‘3, 3′, 4′, 5, 7-pentahydroxyflavone isolated from green leafy vegetables of karnataka on three bacterial strains. Biomedical and Pharmacology Journal. 2020 Jun 25;13(2):849-63.

7.  

Rajesh MK, Gangaraj KP, Prabhudas SK, Prasad TK. The complete chloroplast genome data of Areca catechu (Arecaceae). Data in Brief. 2020 Dec 1;33:106444.

8.  

Dagamajalu, S., Vijayakumar, M., Shetty, R., Rex, D. A. B., Narayana Kotimoole, C. and Prasad, T. S. K. (2020). Proteogenomic examination of esophageal squamous cell carcinoma (ESCC)

9.  

Muliyar RK, Chowdappa P, Behera SK, Kasaragod S, Gangaraj KP, Kotimoole CN, Nekrakalaya B, Mohanty V, Sampgod RB, Banerjee G, Das AJ. Assembly and annotation of the nuclear and organellar genomes of a dwarf coconut (Chowghat Green Dwarf) possessing enhanced disease resistance. OMICS: A Journal of Integrative Biology. 2020 Dec 1;24(12):726-42.

10.  

Karthikkeyan G, Pervaje R, Subbannayya Y, Patil AH, Modi PK, Prasad TS. Plant omics: metabolomics and network pharmacology of liquorice, Indian Ayurvedic Medicine Yashtimadhu. OMICS: A Journal of Integrative Biology. 2020 Dec 1;24(12):743-55.

11.  

Karthikkeyan G, Najar MA, Pervaje R, Pervaje SK, Modi PK, Prasad TS. Identification of molecular network associated with neuroprotective effects of Yashtimadhu (Glycyrrhiza glabra L.) by quantitative proteomics of rotenone-induced Parkinson’s disease model. Acs Omega. 2020 Oct 6;5(41):26611-25.

12.  

Yadav R, Parihar RD, Dhiman U, Dhamija P, Upadhyay SK, Imran M, Behera SK, Prasad TK. Docking of fda approved drugs targeting nsp-16, n-protein and main protease of sars-cov-2 as dual inhibitors. Biointerface Res. Appl. Chem. 2020;11(3):9848-61.

13.  

Thoduvayil S, Dhandapani G, Brahma R, Devasahayam Arokia Balaya R, Mangalaparthi KK, Patel K, Kumar M, Tennyson J, Satheeshkumar PK, Kulkarni MJ, Pinto SM. Triton X‐114 fractionated subcellular proteome of Leptospira interrogans shows selective enrichment of pathogenic and outer membrane proteins in the detergent fraction. Proteomics. 2020 Oct;20(19-20):2000170.

14.  

Mangalaparthi KK, Patel K, Khan AA, Manoharan M, Karunakaran C, Murugan S, Gupta R, Gupta R, Khanna-Gupta A, Chaudhuri A, Kumar P. Mutational landscape of esophageal squamous cell carcinoma in an Indian cohort. Frontiers in oncology. 2020 Aug 20;10:1457.

15.  

Gouda MM, Rex DA, Es SP, Modi PK, Chanderasekaran J, Bhandary YP. Proteomics analysis revealed the importance of inflammation-mediated downstream pathways and the protective role of curcumin in bleomycin-induced pulmonary fibrosis in C57BL/6 mice. Journal of Proteome Research. 2020 Jul 3;19(8):2950-63.

16.  

Kasaragod S, Mohanty V, Tyagi A, Behera SK, Patil AH, Pinto SM, Prasad TK, Modi PK, Gowda H. CusVarDB: A tool for building customized sample-specific variant protein database from next-generation sequencing datasets. F1000Research. 2020 Nov 16;9:344.

17.  

Sharma T, Datta KK, Kumar M, Dey G, Khan AA, Mangalaparthi KK, Saharan P, Chinnapparaj S, Aggarwal A, Singla N, Ghosh S. Intracranial aneurysm biomarker candidates identified by a proteome-wide study. OMICS: A Journal of Integrative Biology. 2020 Aug 1;24(8):483-92.

18.  

 Saraf, K. K., Kumaresan, A., Gupta, M. D., Karthikkeyan, G., Prasad, T. S. K., Modi, P. K., Ramesha, K., Jeyakumar, S. and Manimaran, A. (2020). Metabolomics Fingerprinting of Bull Spermatozoa for Identification of Fertility Signature Metabolites. Molecular Reproduction and Development.