Publications

1.  

Kalal BS, Modi PK, Najar MA, Behera SK, Upadhya D, Prasad TS, Pai VR. Hyperphosphorylation of HDAC2 promotes drug resistance in a novel dual drug resistant mouse melanoma cell line model: an in vitro study. American journal of cancer research. 2021;

2.  

Subba P, Prasad TS. Plant phosphoproteomics: known knowns, known unknowns, and unknown unknowns of an emerging systems science frontier. OMICS: A Journal of Integrative Biology. 2021;

3.  

Behera SK, Modi PK, Karthikkeyan G, Pervaje SK, Pervaje R, Raju R, Prasad TS, Subbannayya Y. From LC-MS/MS metabolomics profiling of Kanchanara Guggulu to molecular docking and dynamics simulation of quercetin pentaacetate with aldose reductase. Bioinformation. 2021;

4.  

Rajesh MK, Gangurde SS, Pandey MK, Niral V, Sudha R, Jerard BA, Kadke GN, Sabana AA, Muralikrishna KS, Samsudeen K, Karun A. Insights on genetic diversity, population structure, and linkage disequilibrium in globally diverse coconut accessions using genotyping-by-sequencing. Omics: A Journal of Integrative Biology. 2021;

5.  

Chatterjee O, Gopalakrishnan L, Mol P, Advani J, Nair B, Shankar SK, Mahadevan A, Prasad TS. The normal human adult hypothalamus proteomic landscape: rise of neuroproteomics in biological psychiatry and systems biology. OMICS: A Journal of Integrative Biology. 2021;

6.  

Subba P, Prasad TS. Protein crotonylation expert review: a new lens to take post-translational modifications and cell biology to new heights. OMICS: A Journal of Integrative Biology. 2021;

7.  

Najar MA, Aravind A, Dagamajalu S, Sidransky D, Ashktorab H, Smoot DT, Gowda H, Prasad TK, Modi PK, Chatterjee A. Hyperactivation of MEK/ERK pathway by Ca2+/calmodulin‐dependent protein kinase kinase 2 promotes cellular proliferation by activating cyclin‐dependent kinases and minichromosome maintenance protein in gastric cancer cells. Molecular Carcinogenesis. 2021;

8.  

Kalal BS, Modi PK, Upadhya D, Saha P, Prasad TS, Pai VR. Inhibition of bone morphogenetic proteins signaling suppresses metastasis melanoma: a proteomics approach. American journal of translational research. 2021;

9.  

Antil N, Kumar M, Behera SK, Arefian M, Kotimoole CN, Rex DA, Prasad TS. Unraveling Toxoplasma gondii GT1 strain virulence and new protein-coding genes with proteogenomic analyses. OMICS: A Journal of Integrative Biology. 2021;

10.  

Dagamajalu S, Rex DA, Suchitha GP, Rai AB, Rainey JK, Prasad TK. The network map of Elabela signaling pathway in physiological and pathological conditions. Journal of Cell Communication and Signaling. 2022 Mar;16(1):145-54.

11.  

Sarma A, Gunasekaran D, Rex DA, Sikha T, Phukan H, Kiran KM, Pinto SM, Prasad TS, Madanan MG. Extracellular proteome analysis shows the abundance of histidine kinase sensor protein, DNA helicase, putative lipoprotein containing peptidase M75 domain and peptidase C39 domain protein in Leptospira interrogans grown in EMJH medium. Pathogens. 2021 Jul 6;10(7):852.

12.  

Rex DA, Dagamajalu S, Kandasamy RK, Raju R, Prasad TK. SARS-CoV-2 signaling pathway map: A functional landscape of molecular mechanisms in COVID-19. Journal of Cell Communication and Signaling. 2021 Dec;15(4):601-8.

13.  

Rex DA, Arun Kumar ST, Modi PK, Keshava Prasad TS. Broadening COVID-19 Interventions to Drug innovation: neprilysin pathway as a friend, foe, or promising molecular target?. OMICS: A Journal of Integrative Biology. 2021 Jul 1;25(7):408-16.

14.  

Rex DA, Arun Kumar ST, Rai AB, Kotimoole CN, Modi PK, Prasad TS. Novel post-translational modifications and molecular substrates in glioma identified by bioinformatics. OMICS: A Journal of Integrative Biology. 2021 Jul 1;25(7):463-73.

15.  

Gopalakrishnan L, Chatterjee O, Raj C, Pullimamidi D, Advani J, Mahadevan A, Keshava Prasad TS. An assembly of galanin–galanin receptor signaling network. Journal of cell communication and signaling. 2021 Jun;15(2):269-75.

16.  

Najar MA, Rex DA, Modi PK, Agarwal N, Dagamajalu S, Karthikkeyan G, Vijayakumar M, Chatterjee A, Sankar U, Prasad TK. A complete map of the Calcium/calmodulin-dependent protein kinase kinase 2 (CAMKK2) signaling pathway. Journal of cell communication and signaling. 2021 Jun;15(2):283-90.

17.  

Dagamajalu S, Rex DA, Gopalakrishnan L, Karthikkeyan G, Gurtoo S, Modi PK, Mohanty V, Mujeeburahiman M, Soman S, Raju R, Tiwari V. A network map of endothelin mediated signaling pathway. Journal of Cell Communication and Signaling. 2021 Jun;15(2):277-82.

18.  

Dagamajalu S, Rex DA, Palollathil A, Shetty R, Bhat G, Cheung LW, Prasad TK. A pathway map of AXL receptor-mediated signaling network. Journal of Cell Communication and Signaling. 2021 Mar;15(1):143-8.

19.  

Palollathil A, Aravind A, Vijayakumar M, Kotimoole CN, Mohanty V, Behera SK, Kashyap V, Kiran Kumar KM, Shetty R, Codi JA, Raju R. Omics data mining for multiPTMs in oral cancer: cellular proteome and secretome of chronic tobacco-treated oral keratinocytes. OMICS: A Journal of Integrative Biology. 2021 Jul 1;25(7):450-62.

20.  

Arefian M, Bhagya N, Prasad TK. Phosphorylation‐mediated signalling in flowering: prospects and retrospects of phosphoproteomics in crops. Biological Reviews. 2021 Oct;96(5):2164-91.

21.  

Mohanty V, Subbannayya Y, Patil S, Abdulla R, Ganesh MS, Pal A, Ray JG, Sidransky D, Gowda H, Prasad TK, Chatterjee A. Molecular alterations in oral cancer between tobacco chewers and smokers using serum proteomics. Cancer Biomarkers. 2021 Nov;31(4):361-73.

22.  

Shaikh SB, Najar MA, Prasad TS, Bhandary YP. Comparative protein profiling reveals the inhibitory role of curcumin on IL-17A mediated minichromosome maintenance (MCM) proteins as novel putative markers for acute lung injury in vivo. Biomedicine & Pharmacotherapy. 2021 Sep 1;141:111715.

23.  

Najar MA, Modi PK, Ramesh P, Sidransky D, Gowda H, Prasad TK, Chatterjee A. Molecular profiling associated with calcium/calmodulin-dependent protein kinase kinase 2 (CAMKK2)-mediated carcinogenesis in gastric cancer. Journal of proteome research. 2021 Apr 12;20(5):2687-703.

24.  

Shaikh SB, Najar MA, Prabhu A, Rex DA, Chanderasekaran J, Behera SK, Modi PK, Prasad TS, Bhandary YP. The unique molecular targets associated antioxidant and antifibrotic activity of curcumin in in vitro model of acute lung injury: A proteomic approach. BioFactors. 2021 Jul;47(4):627-44.

25.  

Karthikkeyan G, Pervaje R, Pervaje SK, Prasad TS, Modi PK. Prevention of MEK-ERK-1/2 hyper-activation underlines the neuroprotective effect of Glycyrrhiza glabra L.(Yashtimadhu) against rotenone-induced cellular and molecular aberrations. Journal of ethnopharmacology. 2021 Jun 28;274:114025.

26.  

Shaikh SB, Najar MA, Prabhu A, Rex DA, Chanderasekaran J, Behera SK, Modi PK, Prasad TS, Bhandary YP. The unique molecular targets associated antioxidant and antifibrotic activity of curcumin in in vitro model of acute lung injury: A proteomic approach. BioFactors. 2021 Jul;47(4):627-44.

27.  

Sivagurunathan S, Selvan LD, Khan AA, Parameswaran S, Bhattacharjee H, Gogoi K, Gowda H, Prasad TK, Pandey A, Kumar SA, Rishi P. Proteomics-based approach for differentiation of age-related macular degeneration sub-types. Indian Journal of Ophthalmology. 2021 Mar 1;69(3):647-54.

28.  

Santhoshkumar R, Preethish-Kumar V, Mangalaparthi KK, Unni S, Padmanabhan B, TS KP, Nongthomba U, Atchayaram N, Narayanappa G. A dominant C150Y mutation in FHL1 induces structural alterations in LIM2 domain causing protein aggregation in human and Drosophila indirect flight muscles. Journal of Molecular Neuroscience. 2021 Nov;71(11):2324-35.

29.  

DasGupta M, Kumaresan A, Saraf KK, Karthikkeyan G, Prasad TK, Modi PK, Ramesha K, Jeyakumar S, Manimaran A. Preliminary comparative deep metabolomic analysis of spermatozoa from zebu and crossbred cattle suggests associations between metabolites, sperm quality and fertility. Reproduction, Fertility and Development. 2021 Apr 1;33(6):427-36.

30.  

Mohanty V, Subbannayya Y, Patil S, Puttamallesh VN, Najar MA, Datta KK, Pinto SM, Begum S, Mohanty N, Routray S, Abdulla R. Molecular alterations in oral cancer using high-throughput proteomic analysis of formalin-fixed paraffin-embedded tissue. Journal of cell communication and signaling. 2021 Sep;15(3):447-59.

31.  

Ashokan M, Ramesha KP, Hallur S, Karthikkeyan G, Rana E, Azharuddin N, Raj SR, Jeyakumar S, Kumaresan A, Kataktalware MA, Das DN. Differences in milk metabolites in Malnad Gidda (Bos indicus) cows reared under pasture-based feeding system. Scientific Reports. 2021 Feb 2;11(1):2831.

32.  

Bansal P, Antil N, Kumar M, Yamaryo-Botté Y, Rawat RS, Pinto S, Datta KK, Katris NJ, Botté CY, Prasad TK, Sharma P. Protein kinase TgCDPK7 regulates vesicular trafficking and phospholipid synthesis in Toxoplasma gondii. PLoS pathogens. 2021 Feb 26;17(2):e1009325.

33.  

Jain A, Kotimoole CN, Ghoshal S, Bakshi J, Chatterjee A, Prasad TS, Pal A. Identification of potential salivary biomarker panels for oral squamous cell carcinoma. Scientific Reports. 2021 Feb 9;11(1):3365.

34.  

Subbannayya Y, Haug M, Pinto SM, Mohanty V, Meås HZ, Flo TH, Prasad TK, Kandasamy RK. The proteomic landscape of resting and activated CD4+ T cells reveal insights into cell differentiation and function. International journal of molecular sciences. 2020 Dec 29;22(1):275.

35.  

Subbannayya Y, Pinto SM. Molecular alterations in oral cancer using high-throughput proteomic analysis of formalin-fixed paraffin-embedded tissue.

36.  

Gopalakrishnan L, Chatterjee O, Raj C, Pullimamidi D, Advani J, Mahadevan A, Keshava Prasad TS. An assembly of galanin–galanin receptor signaling network. Journal of cell communication and signaling. 2021 Jun;15(2):269-75.

37.  

Najar MA, Rex DA, Modi PK, Agarwal N, Dagamajalu S, Karthikkeyan G, Vijayakumar M, Chatterjee A, Sankar U, Prasad TK. A complete map of the Calcium/calmodulin-dependent protein kinase kinase 2 (CAMKK2) signaling pathway. Journal of cell communication and signaling. 2021 Jun;15(2):283-90.

38.  

Dagamajalu S, Rex DA, Palollathil A, Shetty R, Bhat G, Cheung LW, Prasad TK. A pathway map of AXL receptor-mediated signaling network. Journal of Cell Communication and Signaling. 2021 Mar;15(1):143-8.

39.  

Dagamajalu S, Rex DA, Gopalakrishnan L, Karthikkeyan G, Gurtoo S, Modi PK, Mohanty V, Mujeeburahiman M, Soman S, Raju R, Tiwari V. A network map of endothelin mediated signaling pathway. Journal of Cell Communication and Signaling. 2021 Jun;15(2):277-82.

1.  

Kalal BS, Modi PK, Najar MA, Behera SK, Upadhya D, Prasad TS, Pai VR. Hyperphosphorylation of HDAC2 promotes drug resistance in a novel dual drug resistant mouse melanoma cell line model: an in vitro study. American journal of cancer research. 2021;

2.  

Subba P, Prasad TS. Plant phosphoproteomics: known knowns, known unknowns, and unknown unknowns of an emerging systems science frontier. OMICS: A Journal of Integrative Biology. 2021;

3.  

Behera SK, Modi PK, Karthikkeyan G, Pervaje SK, Pervaje R, Raju R, Prasad TS, Subbannayya Y. From LC-MS/MS metabolomics profiling of Kanchanara Guggulu to molecular docking and dynamics simulation of quercetin pentaacetate with aldose reductase. Bioinformation. 2021;

4.  

Rajesh MK, Gangurde SS, Pandey MK, Niral V, Sudha R, Jerard BA, Kadke GN, Sabana AA, Muralikrishna KS, Samsudeen K, Karun A. Insights on genetic diversity, population structure, and linkage disequilibrium in globally diverse coconut accessions using genotyping-by-sequencing. Omics: A Journal of Integrative Biology. 2021;

5.  

Chatterjee O, Gopalakrishnan L, Mol P, Advani J, Nair B, Shankar SK, Mahadevan A, Prasad TS. The normal human adult hypothalamus proteomic landscape: rise of neuroproteomics in biological psychiatry and systems biology. OMICS: A Journal of Integrative Biology. 2021;

6.  

Subba P, Prasad TS. Protein crotonylation expert review: a new lens to take post-translational modifications and cell biology to new heights. OMICS: A Journal of Integrative Biology. 2021;

7.  

Najar MA, Aravind A, Dagamajalu S, Sidransky D, Ashktorab H, Smoot DT, Gowda H, Prasad TK, Modi PK, Chatterjee A. Hyperactivation of MEK/ERK pathway by Ca2+/calmodulin‐dependent protein kinase kinase 2 promotes cellular proliferation by activating cyclin‐dependent kinases and minichromosome maintenance protein in gastric cancer cells. Molecular Carcinogenesis. 2021;

8.  

Kalal BS, Modi PK, Upadhya D, Saha P, Prasad TS, Pai VR. Inhibition of bone morphogenetic proteins signaling suppresses metastasis melanoma: a proteomics approach. American journal of translational research. 2021;

9.  

Antil N, Kumar M, Behera SK, Arefian M, Kotimoole CN, Rex DA, Prasad TS. Unraveling Toxoplasma gondii GT1 strain virulence and new protein-coding genes with proteogenomic analyses. OMICS: A Journal of Integrative Biology. 2021;

10.  

Dagamajalu S, Rex DA, Suchitha GP, Rai AB, Rainey JK, Prasad TK. The network map of Elabela signaling pathway in physiological and pathological conditions. Journal of Cell Communication and Signaling. 2022 Mar;16(1):145-54.

11.  

Sarma A, Gunasekaran D, Rex DA, Sikha T, Phukan H, Kiran KM, Pinto SM, Prasad TS, Madanan MG. Extracellular proteome analysis shows the abundance of histidine kinase sensor protein, DNA helicase, putative lipoprotein containing peptidase M75 domain and peptidase C39 domain protein in Leptospira interrogans grown in EMJH medium. Pathogens. 2021 Jul 6;10(7):852.

12.  

Rex DA, Dagamajalu S, Kandasamy RK, Raju R, Prasad TK. SARS-CoV-2 signaling pathway map: A functional landscape of molecular mechanisms in COVID-19. Journal of Cell Communication and Signaling. 2021 Dec;15(4):601-8.

13.  

Rex DA, Arun Kumar ST, Modi PK, Keshava Prasad TS. Broadening COVID-19 Interventions to Drug innovation: neprilysin pathway as a friend, foe, or promising molecular target?. OMICS: A Journal of Integrative Biology. 2021 Jul 1;25(7):408-16.

14.  

Rex DA, Arun Kumar ST, Rai AB, Kotimoole CN, Modi PK, Prasad TS. Novel post-translational modifications and molecular substrates in glioma identified by bioinformatics. OMICS: A Journal of Integrative Biology. 2021 Jul 1;25(7):463-73.

15.  

Gopalakrishnan L, Chatterjee O, Raj C, Pullimamidi D, Advani J, Mahadevan A, Keshava Prasad TS. An assembly of galanin–galanin receptor signaling network. Journal of cell communication and signaling. 2021 Jun;15(2):269-75.

16.  

Najar MA, Rex DA, Modi PK, Agarwal N, Dagamajalu S, Karthikkeyan G, Vijayakumar M, Chatterjee A, Sankar U, Prasad TK. A complete map of the Calcium/calmodulin-dependent protein kinase kinase 2 (CAMKK2) signaling pathway. Journal of cell communication and signaling. 2021 Jun;15(2):283-90.

17.  

Dagamajalu S, Rex DA, Gopalakrishnan L, Karthikkeyan G, Gurtoo S, Modi PK, Mohanty V, Mujeeburahiman M, Soman S, Raju R, Tiwari V. A network map of endothelin mediated signaling pathway. Journal of Cell Communication and Signaling. 2021 Jun;15(2):277-82.

18.  

Dagamajalu S, Rex DA, Palollathil A, Shetty R, Bhat G, Cheung LW, Prasad TK. A pathway map of AXL receptor-mediated signaling network. Journal of Cell Communication and Signaling. 2021 Mar;15(1):143-8.

19.  

Palollathil A, Aravind A, Vijayakumar M, Kotimoole CN, Mohanty V, Behera SK, Kashyap V, Kiran Kumar KM, Shetty R, Codi JA, Raju R. Omics data mining for multiPTMs in oral cancer: cellular proteome and secretome of chronic tobacco-treated oral keratinocytes. OMICS: A Journal of Integrative Biology. 2021 Jul 1;25(7):450-62.

20.  

Arefian M, Bhagya N, Prasad TK. Phosphorylation‐mediated signalling in flowering: prospects and retrospects of phosphoproteomics in crops. Biological Reviews. 2021 Oct;96(5):2164-91.

21.  

Mohanty V, Subbannayya Y, Patil S, Abdulla R, Ganesh MS, Pal A, Ray JG, Sidransky D, Gowda H, Prasad TK, Chatterjee A. Molecular alterations in oral cancer between tobacco chewers and smokers using serum proteomics. Cancer Biomarkers. 2021 Nov;31(4):361-73.

22.  

Shaikh SB, Najar MA, Prasad TS, Bhandary YP. Comparative protein profiling reveals the inhibitory role of curcumin on IL-17A mediated minichromosome maintenance (MCM) proteins as novel putative markers for acute lung injury in vivo. Biomedicine & Pharmacotherapy. 2021 Sep 1;141:111715.

23.  

Najar MA, Modi PK, Ramesh P, Sidransky D, Gowda H, Prasad TK, Chatterjee A. Molecular profiling associated with calcium/calmodulin-dependent protein kinase kinase 2 (CAMKK2)-mediated carcinogenesis in gastric cancer. Journal of proteome research. 2021 Apr 12;20(5):2687-703.

24.  

Shaikh SB, Najar MA, Prabhu A, Rex DA, Chanderasekaran J, Behera SK, Modi PK, Prasad TS, Bhandary YP. The unique molecular targets associated antioxidant and antifibrotic activity of curcumin in in vitro model of acute lung injury: A proteomic approach. BioFactors. 2021 Jul;47(4):627-44.

25.  

Karthikkeyan G, Pervaje R, Pervaje SK, Prasad TS, Modi PK. Prevention of MEK-ERK-1/2 hyper-activation underlines the neuroprotective effect of Glycyrrhiza glabra L.(Yashtimadhu) against rotenone-induced cellular and molecular aberrations. Journal of ethnopharmacology. 2021 Jun 28;274:114025.

26.  

Shaikh SB, Najar MA, Prabhu A, Rex DA, Chanderasekaran J, Behera SK, Modi PK, Prasad TS, Bhandary YP. The unique molecular targets associated antioxidant and antifibrotic activity of curcumin in in vitro model of acute lung injury: A proteomic approach. BioFactors. 2021 Jul;47(4):627-44.

27.  

Sivagurunathan S, Selvan LD, Khan AA, Parameswaran S, Bhattacharjee H, Gogoi K, Gowda H, Prasad TK, Pandey A, Kumar SA, Rishi P. Proteomics-based approach for differentiation of age-related macular degeneration sub-types. Indian Journal of Ophthalmology. 2021 Mar 1;69(3):647-54.

28.  

Santhoshkumar R, Preethish-Kumar V, Mangalaparthi KK, Unni S, Padmanabhan B, TS KP, Nongthomba U, Atchayaram N, Narayanappa G. A dominant C150Y mutation in FHL1 induces structural alterations in LIM2 domain causing protein aggregation in human and Drosophila indirect flight muscles. Journal of Molecular Neuroscience. 2021 Nov;71(11):2324-35.

29.  

DasGupta M, Kumaresan A, Saraf KK, Karthikkeyan G, Prasad TK, Modi PK, Ramesha K, Jeyakumar S, Manimaran A. Preliminary comparative deep metabolomic analysis of spermatozoa from zebu and crossbred cattle suggests associations between metabolites, sperm quality and fertility. Reproduction, Fertility and Development. 2021 Apr 1;33(6):427-36.

30.  

Mohanty V, Subbannayya Y, Patil S, Puttamallesh VN, Najar MA, Datta KK, Pinto SM, Begum S, Mohanty N, Routray S, Abdulla R. Molecular alterations in oral cancer using high-throughput proteomic analysis of formalin-fixed paraffin-embedded tissue. Journal of cell communication and signaling. 2021 Sep;15(3):447-59.

31.  

Ashokan M, Ramesha KP, Hallur S, Karthikkeyan G, Rana E, Azharuddin N, Raj SR, Jeyakumar S, Kumaresan A, Kataktalware MA, Das DN. Differences in milk metabolites in Malnad Gidda (Bos indicus) cows reared under pasture-based feeding system. Scientific Reports. 2021 Feb 2;11(1):2831.

32.  

Bansal P, Antil N, Kumar M, Yamaryo-Botté Y, Rawat RS, Pinto S, Datta KK, Katris NJ, Botté CY, Prasad TK, Sharma P. Protein kinase TgCDPK7 regulates vesicular trafficking and phospholipid synthesis in Toxoplasma gondii. PLoS pathogens. 2021 Feb 26;17(2):e1009325.

33.  

Subbannayya Y, Haug M, Pinto SM, Mohanty V, Meås HZ, Flo TH, Prasad TK, Kandasamy RK. The proteomic landscape of resting and activated CD4+ T cells reveal insights into cell differentiation and function. International journal of molecular sciences. 2020 Dec 29;22(1):275.

34.  

Subbannayya Y, Pinto SM. Molecular alterations in oral cancer using high-throughput proteomic analysis of formalin-fixed paraffin-embedded tissue.

35.  

Gopalakrishnan L, Chatterjee O, Raj C, Pullimamidi D, Advani J, Mahadevan A, Keshava Prasad TS. An assembly of galanin–galanin receptor signaling network. Journal of cell communication and signaling. 2021 Jun;15(2):269-75.

36.  

Najar MA, Rex DA, Modi PK, Agarwal N, Dagamajalu S, Karthikkeyan G, Vijayakumar M, Chatterjee A, Sankar U, Prasad TK. A complete map of the Calcium/calmodulin-dependent protein kinase kinase 2 (CAMKK2) signaling pathway. Journal of cell communication and signaling. 2021 Jun;15(2):283-90.

37.  

Dagamajalu S, Rex DA, Palollathil A, Shetty R, Bhat G, Cheung LW, Prasad TK. A pathway map of AXL receptor-mediated signaling network. Journal of Cell Communication and Signaling. 2021 Mar;15(1):143-8.

38.  

Dagamajalu S, Rex DA, Gopalakrishnan L, Karthikkeyan G, Gurtoo S, Modi PK, Mohanty V, Mujeeburahiman M, Soman S, Raju R, Tiwari V. A network map of endothelin mediated signaling pathway. Journal of Cell Communication and Signaling. 2021 Jun;15(2):277-82.