Publications

1.  

Chatterjee O, Gopalakrishnan L, Pullimamidi D, Raj C, Yelamanchi S, Gangadharappa BS, Nair B, Mahadevan A, Raju R, Keshava Prasad TS. A molecular network map of orexin-orexin receptor signaling system. Journal of cell communication and signaling. 2023;

2.  

Deolankar SC, Najar MA, Ramesh P, Kanichery A, Kudva AK, Raghu SV, Prasad TK. Discovery of molecular networks of neuroprotection conferred by brahmi extract in Aβ42-induced toxicity model of Drosophila melanogaster using a quantitative proteomic approach. Molecular neurobiology. 2023;

3.  

Deolankar SC, Najar MA, Ramesh P, Kanichery A, Kudva AK, Raghu SV, Prasad TK. Discovery of molecular networks of neuroprotection conferred by brahmi extract in Aβ42-induced toxicity model of Drosophila melanogaster using a quantitative proteomic approach. Molecular neurobiology. 2023;

4.  

Abhinand CS, Ibrahim J, Keshava Prasad TS, Raju R, Oommen OV, Nair AS. Molecular docking and dynamics studies for the identification of Nipah virus glycoprotein inhibitors from Indian medicinal plants. Journal of Biomolecular Structure and Dynamics. 2023;

5.  

Husain AA, Pinto SM, Subbannayya Y, Kapoor S, Khulkhule P, Bhartiya N, Prasad TK, Daginawala HF, Singh LR, Kashyap RS. Development of multiple reaction monitoring (MRM) assays to identify Brucella abortus proteins in the serum of humans and livestock. PROTEOMICS–Clinical Applications. 2023;

6.  

Ashwitha A, Ramesha KP, Ramesh P, Kootimole CN, Devadasan MJ, Ammankallu S, Jeyakumar S, Kumaresan A, Veerappa VG, Das DN, Prasad TS. Quantitative proteomics profiling of spermatozoa and seminal plasma reveals proteins associated with semen quality in Bos indicus bulls. Journal of Proteomics. 2023;

7.  

Rex DA, Dagamajalu S, Gouda MM, Suchitha GP, Chanderasekaran J, Raju R, Prasad TK, Bhandary YP. A comprehensive network map of IL-17A signaling pathway. Journal of Cell Communication and Signaling. 2023;

8.  

Chatterjee O, Gopalakrishnan L, Pullimamidi D, Raj C, Yelamanchi S, Gangadharappa BS, Nair B, Mahadevan A, Raju R, Keshava Prasad TS. A molecular network map of orexin-orexin receptor signaling system. Journal of cell communication and signaling. 2023;

9.  

Dagamajalu S, Rex DA, Suchitha GP, Rai AB, Kumar S, Joshi S, Raju R, Prasad TK. A network map of discoidin domain receptor 1 (DDR1)-mediated signaling in pathological conditions. Journal of Cell Communication and Signaling. 2023;

10.  

Abhinand CS, Prabhakaran AA, Krishnamurthy A, Raju R, Keshava Prasad TS, Nair AS, Rajasekharan KN, Oommen OV, Sudhakaran PR. SARS-CoV-2 variants infectivity prediction and therapeutic peptide design using computational approaches. Journal of Biomolecular Structure and Dynamics. 2023;

11.  

Ramesh P, Babu S, Ammankallu S, Codi JA, Prasad TS, Raju R. Helicobacter pylori regulated microRNA map of human gastric cells. Helicobacter. 2023 Feb;28(1):e12941.

12.  

Husain AA, Pinto SM, Agarwal N, Behera SK, Khulkhule PR, Bhartiya NM, Subbannayya Y, Prasad TK, Singh LR, Daginawala HF, Kashyap RS. Comprehensive proteomic analysis of Brucella melitensis ATCC23457 strain reveals metabolic adaptations in response to nutrient stress. Current microbiology. 2023;

13.  

Mol P, Balaya RD, Dagamajalu S, Babu S, Chandrasekaran P, Raghavan R, Suresh S, Ravishankara N, Raju AH, Nair B, Modi PK. A network map of GDNF/RET signaling pathway in physiological and pathological conditions. Journal of Cell Communication and Signaling. 2023;

14.  

Abhinand CS, Galipon J, Mori M, Ramesh P, Prasad TS, Raju R, Sudhakaran PR, Tomita M. Temporal phosphoproteomic analysis of VEGF-A signaling in HUVECs: an insight into early signaling events associated with angiogenesis. Journal of Cell Communication and Signaling. 2023;

15.  

Devasahayam Arokia Balaya R, Chandrasekaran J, Kanekar S, Kumar Modi P, Dagamajalu S, Gopinathan K, Raju R, Prasad TK. Calcium/calmodulin-dependent protein kinase kinase 2 (CAMKK2) inhibitors: a novel approach in small molecule discovery. Journal of Biomolecular Structure and Dynamics. 2023;

16.  

Sanjeev D, Dagamajalu S, Shaji V, George M, Subbannayya Y, Prasad TK, Raju R, Devasahayam Arokia Balaya R. A network map of macrophage-stimulating protein (MSP) signaling. Journal of Cell Communication and Signaling. 2023;

17.  

Kotimoole CN, Antil N, Kasaragod S, Behera SK, Aravind A, Reiling N, Flo TH, Prasad TS. Development of a Spectral Library for the Discovery of Altered Genomic Events in Mycobacterium avium Associated With Virulence Using Mass Spectrometry–Based Proteogenomic Analysis. Molecular & Cellular Proteomics. 2023;

18.  

Upadhyay SS, Devasahayam Arokia Balaya R, Parate SS, Dagamajalu S, Keshava Prasad TS, Shetty R, Raju R. An assembly of TROP2-mediated signaling events. Journal of Cell Communication and Signaling. 2023;

19.  

Suchitha GP, Balaya RD, Raju R, Keshava Prasad TS, Dagamajalu S. A network map of cytoskeleton-associated protein 4 (CKAP4) mediated signaling pathway in cancer. Journal of Cell Communication and Signaling. 2023;

20.  

Kumar S, Balaya RD, Kanekar S, Raju R, Prasad TS, Kandasamy RK. Computational tools for exploring peptide-membrane interactions in gram-positive bacteria. Computational and Structural Biotechnology Journal. 2023;

21.  

Ramesh P, Behera SK, Kotimoole CN, Mohanty V, Raju R, Prasad TK, Codi JA. Mining proteomics data to extract post-translational modifications associated with gastric cancer. Amino Acids. 2023;

22.  

Mangalaparthi KK, Patel K, Khan AA, Nair B, Kumar RV, Prasad TS, Sidransky D, Chatterjee A, Pandey A, Gowda H. Molecular characterization of esophageal squamous cell carcinoma using quantitative proteomics. Cancers. 2023;

23.  

Devadasan MJ, Ramesha KP, Ramesh P, Kootimole CN, Jeyakumar S, Ashwitha A, Ammankallu S, Rai AB, Kumaresan A, Vedamurthy VG, Raju R. Exploring molecular dynamic indicators associated with reproductive performance of Bos indicus cattle in blood plasma samples through data-independent acquisition mass spectrometry. Journal of Proteomics. 2023;

24.  

Hegde A, Upadhyay SS, Prasad TS, Modi PK. Mass spectrometry–based approaches for the identification of molecular mechanism of action of ayurvedic medicines in Parkinson disease. InAyurvedic Herbal Preparations in Neurological Disorders 2023;

25.  

Phukan H, Sarma A, Rex DA, Christie SA, Sabu SK, Hariharan S, Prasad TS, Madanan MG. Physiological temperature and osmotic changes drive dynamic proteome alterations in the leptospiral outer membrane and enhance protein export systems. Journal of Proteome Research. 2023;

26.  

Ranade AV, Hegde PS, Bhat MA, Rai P, Vinodini NA, Aravind A, Prasad TS, Damodara Gowda KM. Astaxanthin and DHA supplementation ameliorates the proteomic profile of perinatal undernutrition-induced adipose tissue dysfunction in adult life. Scientific reports. 2023;

27.  

Rawat RS, Gupta A, Antil N, Bhatnagar S, Singh M, Rawat A, Prasad TK, Sharma P. Protein kinase PfPK2 mediated signalling is critical for host erythrocyte invasion by malaria parasite. PLoS Pathogens. 2023

1.  

Chatterjee O, Gopalakrishnan L, Pullimamidi D, Raj C, Yelamanchi S, Gangadharappa BS, Nair B, Mahadevan A, Raju R, Keshava Prasad TS. A molecular network map of orexin-orexin receptor signaling system. Journal of cell communication and signaling. 2023;

2.  

Deolankar SC, Najar MA, Ramesh P, Kanichery A, Kudva AK, Raghu SV, Prasad TK. Discovery of molecular networks of neuroprotection conferred by brahmi extract in Aβ42-induced toxicity model of Drosophila melanogaster using a quantitative proteomic approach. Molecular neurobiology. 2023;

3.  

Deolankar SC, Najar MA, Ramesh P, Kanichery A, Kudva AK, Raghu SV, Prasad TK. Discovery of molecular networks of neuroprotection conferred by brahmi extract in Aβ42-induced toxicity model of Drosophila melanogaster using a quantitative proteomic approach. Molecular neurobiology. 2023;

4.  

Abhinand CS, Ibrahim J, Keshava Prasad TS, Raju R, Oommen OV, Nair AS. Molecular docking and dynamics studies for the identification of Nipah virus glycoprotein inhibitors from Indian medicinal plants. Journal of Biomolecular Structure and Dynamics. 2023;

5.  

Husain AA, Pinto SM, Subbannayya Y, Kapoor S, Khulkhule P, Bhartiya N, Prasad TK, Daginawala HF, Singh LR, Kashyap RS. Development of multiple reaction monitoring (MRM) assays to identify Brucella abortus proteins in the serum of humans and livestock. PROTEOMICS–Clinical Applications. 2023;

6.  

Ashwitha A, Ramesha KP, Ramesh P, Kootimole CN, Devadasan MJ, Ammankallu S, Jeyakumar S, Kumaresan A, Veerappa VG, Das DN, Prasad TS. Quantitative proteomics profiling of spermatozoa and seminal plasma reveals proteins associated with semen quality in Bos indicus bulls. Journal of Proteomics. 2023;

7.  

Rex DA, Dagamajalu S, Gouda MM, Suchitha GP, Chanderasekaran J, Raju R, Prasad TK, Bhandary YP. A comprehensive network map of IL-17A signaling pathway. Journal of Cell Communication and Signaling. 2023;

8.  

Chatterjee O, Gopalakrishnan L, Pullimamidi D, Raj C, Yelamanchi S, Gangadharappa BS, Nair B, Mahadevan A, Raju R, Keshava Prasad TS. A molecular network map of orexin-orexin receptor signaling system. Journal of cell communication and signaling. 2023;

9.  

Dagamajalu S, Rex DA, Suchitha GP, Rai AB, Kumar S, Joshi S, Raju R, Prasad TK. A network map of discoidin domain receptor 1 (DDR1)-mediated signaling in pathological conditions. Journal of Cell Communication and Signaling. 2023;

10.  

Abhinand CS, Prabhakaran AA, Krishnamurthy A, Raju R, Keshava Prasad TS, Nair AS, Rajasekharan KN, Oommen OV, Sudhakaran PR. SARS-CoV-2 variants infectivity prediction and therapeutic peptide design using computational approaches. Journal of Biomolecular Structure and Dynamics. 2023;

11.  

Ramesh P, Babu S, Ammankallu S, Codi JA, Prasad TS, Raju R. Helicobacter pylori regulated microRNA map of human gastric cells. Helicobacter. 2023 Feb;28(1):e12941.

12.  

Husain AA, Pinto SM, Agarwal N, Behera SK, Khulkhule PR, Bhartiya NM, Subbannayya Y, Prasad TK, Singh LR, Daginawala HF, Kashyap RS. Comprehensive proteomic analysis of Brucella melitensis ATCC23457 strain reveals metabolic adaptations in response to nutrient stress. Current microbiology. 2023;

13.  

Mol P, Balaya RD, Dagamajalu S, Babu S, Chandrasekaran P, Raghavan R, Suresh S, Ravishankara N, Raju AH, Nair B, Modi PK. A network map of GDNF/RET signaling pathway in physiological and pathological conditions. Journal of Cell Communication and Signaling. 2023;

14.  

Abhinand CS, Galipon J, Mori M, Ramesh P, Prasad TS, Raju R, Sudhakaran PR, Tomita M. Temporal phosphoproteomic analysis of VEGF-A signaling in HUVECs: an insight into early signaling events associated with angiogenesis. Journal of Cell Communication and Signaling. 2023;

15.  

Devasahayam Arokia Balaya R, Chandrasekaran J, Kanekar S, Kumar Modi P, Dagamajalu S, Gopinathan K, Raju R, Prasad TK. Calcium/calmodulin-dependent protein kinase kinase 2 (CAMKK2) inhibitors: a novel approach in small molecule discovery. Journal of Biomolecular Structure and Dynamics. 2023;

16.  

Sanjeev D, Dagamajalu S, Shaji V, George M, Subbannayya Y, Prasad TK, Raju R, Devasahayam Arokia Balaya R. A network map of macrophage-stimulating protein (MSP) signaling. Journal of Cell Communication and Signaling. 2023;

17.  

Kotimoole CN, Antil N, Kasaragod S, Behera SK, Aravind A, Reiling N, Flo TH, Prasad TS. Development of a Spectral Library for the Discovery of Altered Genomic Events in Mycobacterium avium Associated With Virulence Using Mass Spectrometry–Based Proteogenomic Analysis. Molecular & Cellular Proteomics. 2023;

18.  

Upadhyay SS, Devasahayam Arokia Balaya R, Parate SS, Dagamajalu S, Keshava Prasad TS, Shetty R, Raju R. An assembly of TROP2-mediated signaling events. Journal of Cell Communication and Signaling. 2023;

19.  

Suchitha GP, Balaya RD, Raju R, Keshava Prasad TS, Dagamajalu S. A network map of cytoskeleton-associated protein 4 (CKAP4) mediated signaling pathway in cancer. Journal of Cell Communication and Signaling. 2023;

20.  

Kumar S, Balaya RD, Kanekar S, Raju R, Prasad TS, Kandasamy RK. Computational tools for exploring peptide-membrane interactions in gram-positive bacteria. Computational and Structural Biotechnology Journal. 2023;

21.  

Ramesh P, Behera SK, Kotimoole CN, Mohanty V, Raju R, Prasad TK, Codi JA. Mining proteomics data to extract post-translational modifications associated with gastric cancer. Amino Acids. 2023;

22.  

Mangalaparthi KK, Patel K, Khan AA, Nair B, Kumar RV, Prasad TS, Sidransky D, Chatterjee A, Pandey A, Gowda H. Molecular characterization of esophageal squamous cell carcinoma using quantitative proteomics. Cancers. 2023;

23.  

Devadasan MJ, Ramesha KP, Ramesh P, Kootimole CN, Jeyakumar S, Ashwitha A, Ammankallu S, Rai AB, Kumaresan A, Vedamurthy VG, Raju R. Exploring molecular dynamic indicators associated with reproductive performance of Bos indicus cattle in blood plasma samples through data-independent acquisition mass spectrometry. Journal of Proteomics. 2023;

24.  

Hegde A, Upadhyay SS, Prasad TS, Modi PK. Mass spectrometry–based approaches for the identification of molecular mechanism of action of ayurvedic medicines in Parkinson disease. InAyurvedic Herbal Preparations in Neurological Disorders 2023;

25.  

Phukan H, Sarma A, Rex DA, Christie SA, Sabu SK, Hariharan S, Prasad TS, Madanan MG. Physiological temperature and osmotic changes drive dynamic proteome alterations in the leptospiral outer membrane and enhance protein export systems. Journal of Proteome Research. 2023;

26.  

Ranade AV, Hegde PS, Bhat MA, Rai P, Vinodini NA, Aravind A, Prasad TS, Damodara Gowda KM. Astaxanthin and DHA supplementation ameliorates the proteomic profile of perinatal undernutrition-induced adipose tissue dysfunction in adult life. Scientific reports. 2023;

27.  

Rawat RS, Gupta A, Antil N, Bhatnagar S, Singh M, Rawat A, Prasad TK, Sharma P. Protein kinase PfPK2 mediated signalling is critical for host erythrocyte invasion by malaria parasite. PLoS Pathogens. 2023