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Kalal, B. S., Modi, P. K., Najar, M. A., Behera, S. K., Upadhya, D., Prasad, T. S. K. and Pai, V. R. (2021). Hyperphosphorylation of HDAC2 promotes drug resistance in a novel dual drug resistant mouse melanoma cell line model: an in vitro study. American Journal of Cancer Research. 11, 5881–5901. [PubMed]
Dasgupta, M., Kumaresan, A., Saraf, K. K., Nag, P., Sinha, M. K., Aslam, M. K. M., Karthikkeyan, G., Prasad, T. S. K., Modi, P. K., Datta, T. K., Ramesha, K. P., Manimaran, A. and Jeyakumar, S. (2021). Deep metabolomic profiling reveals alterations in fatty acid synthesis and ketone body degradations in spermatozoa and seminal plasma of astheno-oligozoospermic bulls. Frontiers in Veterinary Science. 10.3389/fvets.2021.755560. [PubMed].
Ostaszewski, M., Niarakis, A., Mazein, A., Kuperstein, I., Phair, R., Orta, Resendiz A., …, Rex, D. A. B., …, Kitano, H., Barillot, E., Auffray, C., Balling, R., Schneider, R. and COVID-19 Disease Map Community. (2021). COVID19 Disease Map, a computational knowledge repository of virus-host interaction mechanisms. Molecular Systems Biology. 2021 17, e10387. [PubMed]
Subba, P. and Prasad, T. S. K.(2021). Plant Phosphoproteomics: Known Knowns, Known Unknowns and Unknown Unknowns of an Emerging Systems Science Frontier. OMICS: A Journal of Integrative Biology. 25, 750-769. [PubMed]
Behera, S. K., Modi, P. K., Karthikkeyan, G., Pervaje, S. K., Pervaje, R., Raju, R., Prasad, T. S. K. and Subbannayya, Y. (2021). From LC-MS/MS metabolomics profiling of Kanchanara Guggulu to molecular docking and dynamics simulation of quercetin pentaacetate with aldose reductase. Bioinformation 17, 911-915.
Gayathree, K., Prabhu, A., Pervaje, R., Pervaje S. K., Modi, P.K.* and Prasad, T. S. K.*(2021). Data on dose-dependent cytotoxicity of rotenone and neuroprotection conferred by Yashtimadhu (Glycyrrhiza glabra L.) in an in vitro Parkinson’s disease model. Data in Brief. 39, 107535. [PubMed]
Gopalakrishnan, L., Chatterjee, O., Ravishankar, N., Suresh, S., Raju, R.*, Mahadevan, A. and Prasad, T. S. K.* (2021). Opioid receptors signaling network. Journal of Cell Communication and Signaling. [PubMed]
Rajesh, M. K., Gangurde, S. S., Pandey, M. K., Niral, V., Sudha, R., Jerard, B. A., Kadke, G. N., Sabana, A. A., Muralikrishna, K. S., Samsudeen, K., Karun, A. and Prasad, T. S. K. (2021). Insights on genetic diversity, population structure and linkage disequilibrium in globally diverse coconut accessions using genotyping-by-sequencing. OMICS: A Journal of Integrative Biology. 25, 796-809.
Chatterjee, O., Gopalakrishnan, L., Mol, P., Advani, J., Nair, B., Shankar, S. K., Mahadevan, A. and Prasad, T. S. K. (2021). The Normal Human Adult Hypothalamus Proteomic Landscape: Rise of Neuroproteomics in Biological Psychiatry and Systems Biology. OMICS: A Journal of Integrative Biology. 25, 693-710.
Subba, P. and Prasad, T. S. K.(2021).Protein Crotonylation Expert Review: A New Lens to Take Post-Translational Modifications and Cell Biology to New Heights OMICS: A Journal of Integrative Biology. 25, 617-625. [PubMed]
Najar, M. A., Aravind, A., Dagamajalu, S., Sidransky, D., Ashktorab, H., Smoot, D. T., Gowda, H., Prasad, T. S. K., Modi, P. K. and Chatterjee, A. (2021). Hyperactivation of MEK/ERK pathway by Ca 2+ /calmodulin-dependent protein kinase kinase 2 promotes cellular proliferation by activating cyclin-dependent kinases and minichromosome maintenance protein in gastric cancer cells. Molecular Carcinogenesis. 60, 769-783 [PubMed]
Kalal, B. S., Modi, P. K., Upadhya, D., Saha, P., Prasad, T. S. K. and Pai, V. R. (2021). Inhibition of Bone morphogenetic proteins signaling suppresses metastasis melanoma: A proteomics approach. American Journal of Translational Research. 13, 11081-11093. [PubMed]
Antil, N., Kumar, M., Behera, S. K., Arefian, M., Kotimoole, C. N., Rex, D. A. B. and Prasad, T. S. K. (2021). Unraveling Toxoplasma gondii GT strain virulence and new protein-coding genes with proteogenomic analyses. OMICS: A Journal of Integrative Biology. 25, 591-604
Jain, A. P., Radhakrishnan, A., Pinto, S., Patel, K., Kumar, M., Nanjappa, V., Raja, R., Prasad, T. S. K., Mathur, P. P., Sidransky, D., Chatterjee, A. and Gowda, H. (2021). How to Achieve Therapeutic Response in Erlotinib Resistant Head and Neck Squamous Cell Carcinoma? New Insights from SILAC-based Quantitative Tyrosine Phosphoproteomics. OMICS: A Journal of Integrative Biology. 25, 605-616.
Sarma, A., Dhandapani, G., Rex, D. A. B., Thoduvayil, S., Phukan, H., Kumar, M., Pinto, S. M., Prasad, T. S. K. and Madanan, M. G. (2021). Extracellular proteome analysis shows the abundance of Histidine kinase sensor protein (LIC_11528), DNA helicase (LIC_11624), Putative lipoprotein (LIC_10713) and Peptidase C39 domain protein (LIC_10511) in Leptospira interrogans grown in EMJH medium. Pathogens. 10, 852. [PubMed]
Rex, D. A. B., Dagamajalu, S., Raju, R., Kandasamy, R. K. and Prasad, T. S. K. (2021). SARS-CoV-2 signaling pathway map: A functional landscape of molecular mechanism in COVID-19. Journal of Cell Communication and Signaling. 15, 601-608.
Deolankar S. C., Patil, A. H., Rex, D. A. B., Subba, P., Mahadevan, A. and Prasad, T. S. K. (2021). Mapping Post-Translational Modifications in Brain Regions in Alzheimer’s Disease Using Proteomics Data Mining. OMICS: A Journal of Integrative Biology. 25, 525-536.
Rex, D. A. B., Kumar, S. T. A., Modi, P. K. and Prasad, T. S. K. (2021). Broadening COVID-19 Interventions to Drug Innovation: Neprilysin Pathway as a Friend, Foe or Promising Molecular Target? OMICS: A Journal of Integrative Biology. 25, 408-416.
Rex, D. A. B., Kumar, S. T. A., Rai, B. A., Kotimoole, C. N., Modi, P. K. and Prasad, T. S. K. (2021). Novel Post-translational Modifications and Molecular Substrates in Glioma Identified by Bioinformatics. OMICS: A Journal of Integrative Biology. 25, 463-473.
Gopalakrishnan, L., Chatterjee, O., Raj, C., Pullimamidi, D., Advani, J., Mahadevan, A. and Prasad, T. S. K. (2021). An assembly of galanin–galanin receptor signaling network. Journal of Cell Communication and Signaling.15, 269–275 [PubMed]
Najar, M. A., Rex, D. A. B., Modi, P. K., Agarwal, N., Dagamajalu, S., Karthikkeyan, G., Vijayakumar, M., Chatterjee, A., Sankar, A. and Prasad, T. S. K. (2021). A complete map of the Calcium/calmodulin-dependent protein kinase kinase 2 (CAMKK2) signaling pathway. Journal of Cell Communication and Signaling.15, 283–290. [PubMed]
Dagamajalu, S., Rex, D. A. B., Gopalakrishnan, L., Karthikkeyan, G., Gurtoo. S., Modi, P. K., Mohanty, V., Rahiman, M., Soman, S., Raju, R., Tiwari, V. and Prasad, T. S. K. (2021). A network map of endothelin mediated signaling pathway. Journal of Cell Communication and Signaling. 15, 277-282. [PubMed]
Dagamajalu, S., Rex, D. A. B., Palollathil, A., Shetty, R., Bhat, G., Cheung, L.W.T. and Prasad, T. S. K. (2021). A pathway map of AXL receptor-mediated signaling network. Journal of Cell Communication and Signaling. 15, 143-148 [PubMed]
Patavardhan, S. S., Awasthi, K., Suresh, S., Subba, P., Najar, M. A., D'Souza, L., Nivas, S. K. and Prasad, T. S. K. (2021). Proteome dataset of chili pepper plant (Capsicum frutescens) infested by broad mite (Polyphagotarsonemus latus). Data in Brief. 36, 107095. [PubMed]
Palollathil, A., Aravind, A., Vijayakumar, M., Kotimoole, C. N., Mohanty, V., Behera, S. K., Kashyap, V., Kumar, K. M. K., Shetty, R., Codi, J. A. K., Raju, R. and Prasad, T. S. K. (2021). OMICs data mining for MultiPTMs in oral cancer: cellular proteome and secretome of chronic tobacco treated oral keratinocytes. OMICS: A Journal of Integrative Biology. 25, 450-462. [PubMed]
Arefian, M., Bhagya, N. and Prasad, T. S. K. (2021). Phosphorylation‐mediated signalling in flowering: prospects and retrospects of phosphoproteomics in crops. Biological Reviews. In press.
Behera, S. K., Kasaragod, S., Karthikkeyan, G., Kotimoole, C. N., Raju, R., Prasad, T. S. K. and Subbannayya, Y. (2021). MS2Compound: A user friendly compound identification tool for LC-MS/MS based metabolomics data. OMICS: A Journal of Integrative Biology. In press.
Mohanty, V., Subbannayya, Y., Patil, S., Abdulla, R., Ganesh, M. S., Pal, A., Ray, J. G., Sidransky, D., Gowda, H., Prasad, T. S. K.* and Chatterjee, A.* (2021). Molecular alterations in oral cancer between tobacco chewers and smokers using serum proteomics. Cancer Biomarkers. 31, 361-373.
Shaikh, S. B., Najar. M. A., Prasad, T. S. K. and Bhandary, Y. P. (2021). Comparative Protein Profiling Reveals inhibitory role of curcumin on IL-17A mediated Minichromosome Maintenance (MCM) Proteins as novel putative markers for acute lung injury in vivo. Biomedicine & Pharmacotherapy. In press.
Najar. M. A., Modi. P. K., Ramesh. P., Sidransky. D., Gowda. H., Prasad, T. S. K., and Chatterjee, A. (2021). Molecular profiling associated with Calcium/calmodulin-dependent protein kinase kinase 2 (CAMKK2) mediated carcinogenesis in gastric cancer. Journal of Proteome Research. 7, 2687-2703. [PubMed]
Shaikh, S., Najar, M. A., Prabhu, A., Rex, D. A. B., Chanderasekaran, J., Behera, S., Modi, P., Prasad, T. S. K. and Bhandary, Y. (2021). The unique molecular targets associated anti-oxidant and anti-fibrotic activity of curcumin in in vitro model of acute lung injury: A proteomic approach. BioFactors. In press.
Karthikkeyan, G., Pervaje, R., Pervaje, S. K., Prasad, T. S. K., and Modi, P.K. (2021). Prevention of MEK-ERK-1/2 hyper-activation underlines the neuroprotective effect of Glycyrrhiza glabra L. (Yashtimadhu) against rotenone-induced cellular and molecular aberrations. Journal of Ethnopharmacology. 274, 114025
Sivagurunathan, S., Selvan, L. D. N., Khan, A. A., Parameswaran, S., Bhattacharjee, H., Gogoi, K., Gowda, H., Prasad, T. S. K., Pandey, A., Kumar, S. A., Rishi, P., Rishi, E., Ratra, D., Bhende, M., Janakiraman, N., Biswas, J., and Krishnakumar, S. (2021). Proteomics-based approach for differentiation of age-related macular degeneration sub-types. Indian Journal of Ophthalmology. 69, 647-654. [PubMed]
Santhoshkumar, R., Preethish-Kumar, V., Mangalaparthi, K. K., Unni, S., Padmanabhan, B., Prasad, T. S. K., Nongthomba, U., Atchayaram, N. and Narayanappa, G. (2021). A Dominant C150Y Mutation in FHL1 Induces Structural Alterations in LIM2 Domain Causing Protein Aggregation In Human and Drosophila Indirect Flight Muscles. Journal of Molecular Neuroscience. 10.1007/s12031-020-01777-4. [PubMed]
DasGupta, M., Kumaresan, A., Saraf, K. K., Karthikkeyan, G., Prasad, T. S. K., Modi, P. K., Ramesha, K., Jeyakumar, S. and Manimaran, A. (2021). Preliminary comparative deep-metabolomic analysis of spermatozoa from zebu and crossbred cattle suggests associations between metabolites, sperm quality and fertility. Reproduction, Fertility and Development. In Press
Mohanty, V., Subbannayya, Y., Patil, S. S., Puttamallesh, V. N., Najar, M. A., Datta, K. K., Pinto S. M., Begum, S., Mohanty, N., Routray, S., Abdulla, R., Ray, J. G., Sidransky, D., Gowda, H., Prasad, T. S. K. and Chatterjee, A. (2021). Molecular alterations in oral cancer using high-throughput proteomic analysis of formalin-fixed paraffin-embedded tissue. Journal of Cell Communication and Signaling. 15, 447-459 [PubMed]
Ashokan, M., Ramesha, K. P., Hallur, S., Karthikkeyan, G., Rana, E., Azharuddin, N., Raj, S. R., Jeyakumar, S., Kumaresan, A., Mukund, A., Kataktalware, M. A., Das, D. N. and Prasad, T. S. K. (2021). Differences in milk metabolites in Malad Gidda (Bos indicus) cows reared under pasture-based feeding system. Scientific Reports. 11, 2831 [PubMed]
Bansal, P., Antil, N., Kumar, M., Botte, Y. Y., Rawat, R. S., Pinto, S., Datta, K., Katris, N., Botte, C., Prasad, T. S. K. and Sharma, P., (2021). Protein kinase TgCDPK7 regulates vesicular trafficking and phospholipid synthesis in Toxoplasma gondii. 17, e1009325. PLOS Pathogens. [PubMed]
Jain, A., Kotimoole, C. N., Ghoshal, S., Bakshi, J., Chatterjee, A., Prasad, T. S. K. and Pal, A. (2021). Identification of a potential salivary biomarker panel for Oral Squamous Cell Carcinoma. Scientific Reports. 11, 3365 [PubMed]
Subbannayya, Y., Haug, M., Pinto, S. M., Mohanty, V., Meas, H. Z., Flo, T. H., Prasad, T. S. K. and Kandasamy, R. K. (2021). The proteomic landscape of resting and activated CD4+ T cells reveal insights into cell differentiation and function. International Journal of Molecular Sciences. 22, 275 [PubMed]
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