Center for Systems Biology and Molecular Medicine

Center for Systems Biology and Molecular Medicine

CSBMM
Rajesh Raju, Ph.D.

Assistant Professor


Biography

Dr. Rajesh Raju obtained his Ph.D. in Biotechnology from the Institute of Bioinformatics (IOB), Bangalore and the Kuvempu University, Shivamogga. He has been leading the IOB’s efforts in the development and analysis of signaling pathways available through NetPath, a resource of signaling pathways. He also actively participated in establishing a draft map of human proteome, which featured on the cover of Nature in May 2014. He contributed as a curator, reviewer and coordinator for major global biological data resources such as Human Protein Reference Database, Plasma Proteome Database, Pancreatic Cancer Database, and Triple Negative Breast Cancer Database. He was also involved in analysis of sequence variations in Primary Immunodeficiency Disorders (PID) and the development of an approach for the prediction of novel PID genes in collaboration with the RIKEN Centre for Allergy and Immunology, Japan. Dr. Rajesh Raju received independent young investigator award grant from Science and Engineering Research Board (SERB), Department of Science and Technology, Government of India in 2015. Dr. Rajesh Raju has also represented India in the Indo-Japan youth exchange programme in science. He is reviewer of a number of international journals including Nature Communications, Proteomics and Scientific Reports, among others.

Dr. Rajesh Raju is establishing an Integrated Data Science Unit that would facilitate analysis of biological context-dependent signatures at the genome, transcriptome (mRNA, miRNA, lncRNA etc.), metabolome, proteome, multiPTM profiles as a platform to systems biology research and translation research.

Research Interest/area
  • Biological signal transduction pathways
  • Genomics, transcriptomics, proteomics and metabolomics
  • PTM-omics and identification of enzyme-substrate relationships
  • Development of tools and resources for systems biology
  • Regulatory association between protein-coding and non-coding RNA
    • Education
  • Ph.D. in Biotechnology, Kuvempu University, India, 2012
  • M.Sc. in Biotechnology, Karpagam Arts and Science college, India, 2003
    • Positions held
    • Assistant Professor (Dec 2020 - till date), Centre for Systems Biology and Molecular Medicine, Yenepoya Research Centre, Yenepoya (deemed to be University), Mangalore, Karnataka
    • DST-SERB Scientist (Dec 2015 - Jun 2019), Rajiv Gandhi Centre for Biotechnology (RGCB), Thiruvananthapuram, Kerala
    • Program Scientist (May 2015 - Dec 2015), Rajiv Gandhi Centre for Biotechnology (RGCB), Thiruvananthapuram, Kerala
    • Post-doctoral Fellow (May 2014 - May 2015), Rajiv Gandhi Centre for Biotechnology (RGCB), Thiruvananthapuram, Kerala
    • Faculty Scientist (Feb 2012 - Apr 2014), Institute of Bioinformatics, Bangalore, Karnataka
    • Research Associate (Jul 2007 - Mar 2008), RIKEN Centre for Allergy and Immunology, RIKEN Yokohama, Japan
    • Laboratory Technologist (Jun 2004 – Jan 2005), Medical College, Thiruvananthapuram, Kerala
    Honors and Awards
    • Represented India in the Indo-Japan Youth Exchange Programme in Science (2016)
    • DST-SERB Young Scientist Award, Department of Science and Technology, India
    • Research Associateship, RIKEN Centre for Allergy and Immunology, Japan
    • Senior Research Fellowship, Council of Scientific & Industrial Research, India
    • Qualified National Eligibility Test (UGC-NET) for Lectureship, University Grants Commission, India
    Publications

    Research papers: 58; Review articles: 1;

     2022 | 2021 | 2020 | 2019 | 2018 | 2017 | 2016 | 2015 | 2014 | 2013 | 2012 | 2011 | 2010 | 2009 |
     

    2022 (Number of publications - 09)

    • Abhinand, C. S., Athira, P., Krishnamurthy, A., Raju, R., Prasad, T. S. K., Nair, A. S., Rajasekharan, K. N., Oommen, O. V. and Sudhakaran, P. R. (2022). SARS-CoV-2 variants infectivity prediction and therapeutic peptide design using computational approaches. Journal of Biomolecular Structure & Dynamics. In Press.

    • Abhinand, C. S., Ibrahim, J. M., Prasad, T. S. K., Raju, R., Oommen, O. V. and Nair, A. S. (2022). Molecular docking and dynamics studies for the identification of Nipah virus glycoprotein inhibitors from Indian medicinal plants. Journal of Biomolecular Structure & Dynamics. In Press.

    • Ramesh, P., Babu, S., Ammankallu, A., Codi, J.A.K., Prasad, T. S. K., and Raju, R. (2023). "Helicobacter pylori regulated MicroRNA map of human gastric cells". Helicobacter. In Press.

    • Dagamajalu, S., Rex, D. A. B.,Suchitha, G. P., Rai, A. B., Kumar, S., Joshi, S., Raju, R. and Prasad, T. S. K. (2022). A network map of Discoidin Domain Receptor 1(DDR1)-mediated signaling in pathological conditions. Journal of Cell Communication and Signaling. In Press.

    • Chatterjee, O., Gopalakrishnan, L., Pullimamidi, D., Raj, C., Yelamanchi, S., Gangadharappa, B. S., Nair, B., Mahadevan, A., Raju, R., and Prasad, T.S.K. (2022). A molecular network map of orexin-orexin receptor signaling system Journal of Cell Communication and Signaling. In Press.

    • Rex, D. A. B., Dagamajalu, S., Gouda, M., Suchitha G. P., Chanderasekaran, J., Raju, R., Prasad, T. S. K., and Bhandary, Y. P (2022). A comprehensive network map of IL-17A signaling pathway. Journal of Cell Communication and Signaling. In press.

    • Antil, N., Arefian, M., Kandiyil, M. K., Awasthi, K., Prasad, T. S. K. and Raju, R. (2022). The Core Human MicroRNAs regulated by Toxoplasma gondii. MicroRNA [PubMed]

    • Revikumar, A., Kashyap, V., Palollathil, A., Aravind , A., Raguraman , R., Kumar, K. M. K., Vijayakumar , M., Prasad, T. S. K. and Raju, R. (2022). Multiple G-quadruplex binding ligand induced transcriptomic map of cancer cell lines. Journal of Cell Communication and Signaling. 16, 129-135.

    • Aravind, A., Palollathil, A., D. A. B. Rex, Kumar, K. M. K., Vijayakumar, M., Shetty, R., Codi, J. A. K., Prasad, T. S. K. and Raju, R. (2022). A multi-cellular molecular signaling and functional network map of C-C Motif Chemokine Ligand 18 (CCL18): A chemokine with immunosuppressive and pro-tumor functions. Journal of Cell Communication and Signaling. 16, 293-300. [PubMed]

     

    2021 (Number of publications - 05)

    • Behera, S. K., Modi, P. K., Karthikkeyan, G., Pervaje, S. K., Pervaje, R., Raju, R., Prasad, T. S. K. and Subbannayya, Y. (2021). From LC-MS/MS metabolomics profiling of Kanchanara Guggulu to molecular docking and dynamics simulation of quercetin pentaacetate with aldose reductase. Bioinformation 17, 911-915. (* Corresponding author)

    • Gopalakrishnan, L., Chatterjee, O., Ravishankar, N., Suresh, S., Raju, R.*, Mahadevan, A. and Prasad, T. S. K.* (2021). Opioid receptors signaling network. Journal of Cell Communication and Signaling. (* Corresponding authors) [PubMed]

    • Rex, D. A. B., Dagamajalu, S.*, Raju, R.*, Kandasamy, R. K. and Prasad T. S. K.* (2021). SARS-CoV-2 signaling pathway map: A functional landscape of molecular mechanism in COVID-19. Journal of Cell Communication and Signaling. In press. (* Corresponding authors)

    • Palollathil, A., Aravind, A., Vijayakumar, M.*, Kotimoole, C. N., Mohanty, V., Behera, S. K., Kashyap, V., Mallikarjunaiah, K. K. K., Shetty, R., Codi, J. A. K., Raju, R.* and Prasad, T. S. K.* (2021). OMICs data mining for MultiPTMs in oral cancer: cellular proteome and secretome of chronic tobacco treated oral keratinocytes. OMICS: A Journal of Integrative Biology. In press. (* Corresponding authors)

    • Behera, S. K., Kasaragod, S., Karthikkeyan, G., Kotimoole, C. N., Raju, R. , Prasad, T. S. K., and Subbannayya, Y. (2021). MS2Compound: A user friendly compound identification tool for LC-MS/MS based metabolomics data. OMICS: A Journal of Integrative Biology. In press.

     

    2020 (Number of publications - 01)

    • Dagamajalu, S., Rex, D. A. B., Gopalakrishnan, L., Karthikkeyan, G., Gurtoo, S., Modi, P. K., Mohanty, V., Mujeeburahiman, M., Soman, S., Raju, R., Tiwari, V. and Prasad, T. S. K. (2020). A network map of endothelin mediated signaling pathway. Journal of Cell Communication and Signaling. [PubMed]

    2019 (Number of publications - 01)

    • Sunitha, P., Raju, R*., Sajil, C. K., Abhinand, C. S., Nair, A. S., Oommen, O. V., Sugunan, V. S. and Sudhakaran, P. R. (2019). Temporal VEGFA responsive genes in HUVECs: Gene signatures and potential ligands/receptors fine-tuning angiogenesis. Journal of Cell Communication and Signaling. [PubMed] (*Co-corresponding author)

    2018 (Number of publications - 02)

    • Krug, K., Mertins, P., Zhang, B., Hornbeck, P., Raju, R., Ahmad, R., Szucs, M., Mundt, F., Forestier, D., Jane-Valbuena, J., Keshishian, H., Michael, A. G., Tamayo, P., Mesirov, J. P., Jaffe, J. D., Carr, S. A. and Mani, D. R. (2018). A curated resource for phosphosite-specific signature analysis. Molecular & Cellular Proteomics. 18(3):576-593. [PubMed] 

    • Pinto, S. M., Subbannayya, Y., Rex, D. A. B., Raju, R., Chatterjee, O., Advani, J., Radhakrishnan, A., Prasad, T. S. K., Wani, M. R. and Pandey, A. (2018). A network map of IL-33 signaling pathway. Journal of Cell Communication and Signaling. 12(3):615-624. [PubMed]

    2017 (Number of publications - 01)

    • Richard, V., Raju, R., Paul, A. M., Girijadevi, R., Santhoshkumar, T. R. and Pillai, M. R. (2017). Analysis of MicroRNA-mRNA Interactions in Stem-cell Enriched Fraction of Oral Squamous Cell Carcinoma. Oncology Research. 19;26(1):17-26. [PubMed]

    2016 (Number of publications - 02)

    • Jayaram, S., Gupta, M. K., Raju, R., Gautam, P. and Sirdeshmukh, R. (2016). Multi-Omics Data Integration and Mapping of Altered Kinases to Pathways Reveal Gonadotropin Hormone Signaling in Glioblastoma. OMICS: A Journal of Integrative Biology. 20(12):736-746. [PubMed] 

    • Abhinand, C. S., Raju, R, Soumya, S. J., Arya, P. S. and Sudhakaran, P. R. (2016). VEGF-A/VEGFR2 Signaling network in endothelial cells relevant to angiogenesis. Journal of Cell Communication and Signaling. 10(4):347-354.[PubMed] 

    2015 (Number of publications - 03)

    • Raju, R., Gadakh, S., Gopal, P., George, B., Advani, J., Soman, S., Prasad, T. S. K. and Girijadevi, R. (2015). Differential ligand-signaling network of CCL19/CCL21-CCR7 system. Database (Oxford). 2015. pii: bav106. [PubMed]

    • Sharma, J., Balakrishnan, L., Datta, K. K., Sahasrabuddhe, N. A., Khan, A. A., Sahu, A., Singhal, A., Getnet, D., Raju, R., Chatterjee, A., Gowda, H., Prasad, T. S. K, Shankar, S. and Pandey, A. (2015). A knowledgebase resource for interleukin-17 family mediated signaling. Journal of Cell Communication and Signaling. 9(3):291-6.[PubMed]

    • Mitchell, C. J., Getnet, D., Kim, M. S., Manda, S. S., Kumar, P., Huang, T. C., Pinto, S. M., Nirujogi, R. S., Iwasaki, M., Shaw, P. G., Wu, X., Zhong, J., Chaerkady, R., Marimuthu, A., Muthusamy, B., Sahasrabuddhe, N. A., Raju, R., Bowman, C., Danilova, L., Cutler, J., Kelkar, D. S., Drake, C. G., Prasad, T. S. K, Marchionni, L., Murakami, P. N., Scott, A. F., Shi, L., Thierry-Mieg, D., Irizarry, R., Cope, L., Ishihama, Y., Wang, C., Gowda, H. and Pandey, A. (2015). A multi-omic analysis of human naïve CD4+ T cells. BMC Systems Biology. 6;9:75. [PubMed]

      • 2014 (Number of publications - 12)

    • Raju, R., Paul, A. M., Vivekanand, A., George, B., Lekshmi, R., Vinaykumar, M., Reshmi, G. and Pillai, M. R. (2014). The Triple-Negative Breast Cancer Database: an omics platform for reference, integration and analysis of triple-negative breast cancer data. Breast Cancer Research16:490.[PubMed] 

    • Wu, X., Renuse, S., Sahasrabuddhe, N. A., Zahari, M. A., Chaerkady, R., Kim, M., Nirujogi, R. S., Mohseni, M., Kumar, P., Raju, R., Zhong, J., Yang, J., Jung, J., Neiswinger, J., Newman, R., Qian, J., Zhu, H., Vogelstein, B., Park, B. H. and Pandey, A. (2014). Activation of diverse signaling pathways by oncogenic PIK3CA mutations. Nature Communications. 5, 4961. [PubMed]

    • Kim, M. S., Pinto, S. M., Getnet, D., Nirujogi, R. S., Manda, S. S., Chaerkady, R., Madugundu, A. K., Kelkar, D. S., Isserlin, R., Jain, S., Thomas, J. K., Muthusamy, B., Leal-Rojas, P., Kumar, P., Sahasrabuddhe, N. A., Balakrishnan, L., Advani, J., George, B., Renuse, S., Selvan, L. D. N., Patil, A. H., Nanjappa, V., Radhakrishnan, A., Prasad, S., Subbannayya, T., Raju, R., Kumar, M., Sreenivasamurthy, S. K., Marimuthu, A., Sathe, G. J., Chavan, S., Datta, K. K., Subbannayya, Y., Sahu, A., Yelamanchi, S. D., Jayaram, S., Rajagopalan, P., Sharma, J., Murthy, K. R., Syed, N., Goel, R., Khan, A. A., Ahmad, S., Dey, G., Mudgal, K., Chatterjee, A., Huang, T. C., Zhong, J., Wu, X., Shaw, P. G., Freed, D., Zahari, M. S., Mukherjee, K. K., Shankar, S., Mahadevan, A., Lam, H., Mitchell, C. J., Shankar, S. K., Satishchandra, P., Schroeder, J. T., Sirdeshmukh, R., Maitra, A., Leach, S. D., Drake, C. G., Halushka, M. K., Prasad, T. S. K., Hruban, R. H., Kerr, C. L., Bader, G. D., Iacobuzio-Donahue, C. A., Gowda, H. and Pandey, A. (2014). A draft map of the human proteome. Nature. 509, 575-581. [PubMed]

    • Khan, A., Sandhya, V. K., Singh, P., Parthasarathy, D., Kumar, A., Advani, J., Gattu, R., Ranjit, D.V., Vaidyanathan, R., Prasad, T. S. K., Gabhann, F. M., Pandey, A., *Raju, R. and *Gowda, H. (2014). Signaling network map of endothelial TEK tyrosine kinase. Journal of Signal Transduction. 2014, 172036.[PubMed] (*Corresponding author)

    • Thomas J. K., Kim, M., Balakrishnan, L., Nanjappa, V., Raju, R., Marimuthu, A., Radhakrishnan, R., Muthusamy, B., Khan, A. A., Sakamuri, S., Tankala, S. G., Nair, B., Sirdeshmukh, R., Chatterjee, A., Prasad, T. S. K., Maitra, A., Gowda, H., Hruban, R. H. and Pandey, A. (2014). Pancreatic Cancer Database: An integrative resource for pancreatic cancer. Cancer Biology & Therapy. 19;15(8). [PubMed]

    • Pawar, H., Renuse, S., Khobragade, S. N., Chavan, S., Sathe, G., Kumar, P., Mahale, K. N., Gore, K., Raju, R., Prasad, T. S. K., Harsha, H. C., Patole, M. S. and Pandey, A (2014). Neglected tropical diseases and omics science: Proteogenomics analysis of the promastigote stage of Leishmania major parasite. OMICS: A Journal of Integrative Biology. 18:499-512. [PubMed]

    • *Raju, R., Palapetta, S. M., Sandhya, V. K., Sahu, A., Balakrishnan, L., Advani, J., George, B., Kini, K. R., Prakash, H. S., Prasad, T. S. K., Chang, Y., Chen, L., Pandey, A. and *Gowda H. (2014). A network map of FGF-1/FGFR signaling system. Journal of Signal Transduction. 2014:962962. [PubMed] (*Co-*Corresponding author) 

    • Subbannayya, Y., Anuja, A., Ojha, U. K., Nanjappa, V., Advani, J., Sonawane, A., Subramanian, D., Pandey, A., Prasad, T. S. K. and *Raju, R. (2014). A network map of Gastrin signaling pathway. Journal of Cell Communication and Signaling. 8(2):165-70. (*Corresponding author)

    • Zhong, J., Sharma, J., Raju, R., Palapetta, S. M., Prasad, T. S. K., Huang, T. C., Yoda, A., Tyner, J. W., van Bodegom, D., Weinstock, D. M., Ziegler, S. F. and Pandey, A. (2014). TSLP signaling pathway map: A platform for analysis of TSLP mediated signaling. Database. 2014:bau007.[PubMed]

    • Balakrishnan, L., Bhattacharjee, M., Nirujogi, R. S., Renuse, S., Subbannayya, Y., Marimuthu, A., Srikanth, S. M., Raju, R., Dhillon, M., Kaur, N., Jois, R., Ramachandra, Y. L., Prasad, T. S. K., Mohan, S., Harsha, H. C., Shankar, S. and Pandey, A. (2014). Differential proteomic analysis of synovial fluid from rheumatoid arthritis and osteoarthritis patients. Clinical Proteomics. 11(1):1. [PubMed] 

    • Balakrishnan, L., Nirujogi, R. S., Bhattacharjee, M., Srikanth, M. S., Renuse, S., Kelkar, D. S., Subbannayya, Y., Raju, R., Goel, R., Thomas, J. K., Kaur, N., Dhillon, M., Tankala, S. G., Jois, R., Ramachandra, Y. L., Prasad, T. S. K., Mohan, S. S., Harsha, H. C., Shankar, S. and Pandey, A. (2014). Proteomic analysis of human osteoarthritis synovial fluid. Clinical Proteomics. 11(1):6. [PubMed] 

    • Nanjappa, V., Thomas, J. K., Marimuthu, A., Muthusamy, B., Radhakrishnan, A., Sharma, A., Khan, A. A., Balakrishnan, L., Sahasrabuddhe, N. A., Jhaveri, B. N., Sheth, K. V., Khatana, R. K., Shaw, P. G., Srikanth, S. M., Mathur, P. P., Subramanian, S., Nagaraja, D., Christopher, R., Mathivanan, S., Raju, R., Sirdeshmukh, R., Chatterjee, A., Simpson, R. J., Harsha H. C., Pandey, A. and Prasad T. S. K. (2014). Plasma Proteome Database as a resource for proteomic research- 2014 Update. Nucleic Acids Research. 42(1):D959-965. [PubMed]

      2013 (Number of publications - 04)

    • *Sandhya, V. K., *Raju, R., Verma, R., Advani, J., Sharma, R., Radhakrishnan, A., Nanjappa, V., Narayana, J., Somani, B. L., Mukherjee, K. K., Pandey, A., Christopher, R. and Prasad, T. S. K. (2013). A network map of BDNF/TRKB and BDNF/p75NTR signaling system. Journal of Cell Communication and Signaling. 7(4):301-307. [PubMed]

    • Balakrishnan, L., Soman, S., Patil, Y. B., Advani, J., Thomas, J. K., Venkatesh, D. D., Urmila, K. K., Harsha, H. C., Prasad, T. S. K., Raju, R., Pandey, A., Dimitriadis, E. and Chatterjee, A. (2013). IL-11/IL11RA receptor mediated signaling: a web accessible knowledgebase. Cell Communication and Adhesion. 20(3-4):81-86. [PubMed]

    • Subbannayya, T., Balakrishnan, L., Sudarshan, G., Advani, J., Kumar, S., Mahmood, R., Nair, B., Sirdeshmukh, R., Mukherjee, K. K., Umathe, S. N., Raju, R. and Prasad, T. S. K. (2013). An integrated map of corticotropin-releasing hormone signaling pathway. Journal of Cell Communication and Signaling. 7(4):295-300. [PubMed]

    • *Soman, S., *Raju, R., Sandhya, V. K., Advani, J., Khan, A. A., Harsha, H. C., Sudhakaran, P. R., Pandey, A. and Adishesha, P. K. (2013). A multicellular signal transduction network of AGE/RAGE signaling. Journal of Cell Communication and Signaling. 7(1), 19-23. [PubMed]

      2012 (Number of publications - 05)

    • Dey, G., Radhakrishnan, A., Syed, N., Thomas, J. K., Nadig, A., Srikumar, K., Mathur, P. P., Pandey, A., Lin, S. K., Raju, R. and Prasad, T. S. K*. (2012). Signaling network of Oncostatin M pathway. Journal of Cell Communication and Signaling.7, 103-108. .[PubMed]

    • Kumar, G. S. S., Venugopal, A. K., Kashyap, M. K., Raju, R., Marimuthu, A., Palapetta, S. M., Pandey, A., Mahadevan, A. and Shankar, S. K. (2012). Gene expression profiling of tuberculous meningitis co-infected with HIV. Journal of Proteomics and Bioinformatics. 5, 235-244.[PubMed]

    • Renuse, S., Harsha, H. C., Kumar, P., Acharya, P. K., Sharma, J., Kumar, G. S., Goel, R., Raju, R., Prasad, T. S. K., Slotta, T. and Pandey, A. (2012). Proteomic analysis of an unsequenced plant-Mangifera indica. Journal of Proteomics. 75, 5793-96.[PubMed]

    • Bhattacharjee, M., Raju, R., Radhakrishnan, A., Nanjappa, V., Muthusamy, B., Singh, K., Kuppusaami, D., Lingala, B. T., Pan, A., Mathur, P. P., Harsha, H. C., Prasad, T. S. K., Atkins, G. J., Pandey, A. and Chatterjee, A. (2012). A bioinformatics resource for TWEAK-Fn14 signaling pathway. Journal of Signal Transduction. 2012; 2012:376470. [PubMed]

    • Radhakrishnan, A., Raju, R., Tuladhar, N., Subbannayya, T., Thomas, J. K., Goel, R., Telikicherla, D., Rahiman, B. A., Venkatesh, D. D., Urmila, K. K., Harsha, H. C., Mathur, P. P., Prasad, T. S. K., Pandey, A., Shemanko, C. and Chatterjee, A. (2012). A pathway map of prolactin signaling. Journal of Cell Communication and Signaling. 6(3), 169-173. [PubMed]

      • 2011 (Number of publications - 05)

    • Telikicherla, D., Ambekar, A., Palapetta, S. M., Raju, R., Sharma, J., Prasad, T. S. K., Mohan, S. S., Mukherjee, S. and Pandey, A. (2011). A comprehensive curated resource for Follicle Stimulating Hormone signaling. BMC Research Notes. 4, 408.[PubMed]

    • Goel, R., Raju, R., Maharudraiah, J., Kumar, G. S. S., Ghosh, K., Kumar, A., Lashmi, P. T., Sharma, J., Sharma, R., Balakrishnan, L., Pan, A., Christopher, R., Krishna, V., Mohan, S. S., Harsha, H. C., Mathur, P. P., Pandey, A. and Prasad, T. S. K. (2011). A signaling network of thyroid-stimulating hormone. Journal of Proteomics and Bioinformatics. 4, 238-241.

    • Nanjappa, V., Raju, R., Muthusamy, B., Thomas, J. K., Nidhina, P. A. H., Harsha, H. C., Pandey, A., Anilkumar G. and Prasad, T. S. K. (2011). A comprehensive curated reaction map of leptin signaling pathway. Journal of Proteomics and Bioinformatics. 4, 184-189.

    • Raju, R., Balakrishnan, L., Nanjappa, V., Bhattacharjee, M., Getnet, D., Muthusamy, B., Thomas, J. K., Sharma, J., Rahiman, B. A., Harsha, H. C., Shankar, S., Prasad, T. S. K., Mohan, S. S., Bader, G. D., Wani, M. R. and Pandey, A. (2011). A comprehensive manually curated reaction map of RANKL/RANK signaling pathway. Database. 2110:bar021.[PubMed]

    • Raju, R., Nanjappa, V., Balakrishnan, L., Radhakrishnan, A., Thomas, J. K., Sharma, J., Tian, M., Palapetta, S. M., Subbannayya, T., Sekhar, N. R., Muthusamy, B., Subbannayya, Y., Telikicherla, D., Kumar, G. S. S., Marimuthu, A., Prasad, T. S. K., Harsha, H. C., Rahiman, B. A., Ohara, O., Bader, G. D., Mohan, S. S., Schiemann, W. P. and Pandey, A. (2011). NetSlim: High-confidence curated signaling maps. Database. 2011:bar032. [PubMed]

      2010 (Number of publications - 03)

    • Kandasamy, K*., Mohan, S. S*., Raju, R., Keerthikumar, S., Kumar, G. S. S., Venugopal, A. K., Telikicherla, D., Navarro, J. D., Mathivanan, S., Pecquet, C., Gollapudi, S. K., Tattikota, S. G., Mohan, S., Padhukasahasram, H., Subbannayya, Y., Goel, R., Jacob, H. K. C., Zhong, J., Sekhar, R., Nanjappa, V., Balakrishnan, L., Subbaiah, R., Ramachandra, Y. L., Rahiman, B. A., Prasad, T. S. K., Lin, J., Houtman, J. C. D., Desiderio, S., Renauld, J., Constantinescu, S. N., Ohara, O., Hirano, T., Kubo, M., Singh, S., Khatri, P., Draghici, S., Bader, G. D., Sander, C., Leonard, W. J. and Pandey, A. (2010) NetPath: A public resource of curated signal transduction pathways. Genome Biology. 11, R3. [PubMed] 

    • Hijikata, A., Raju, R., Keerthikumar, S., Ramabadran, S., Balakrishnan, L., Ramadoss, S. K., Pandey, A., Mohan, S. and Ohara, O. (2010). Mutation@ A Glance: An integrative web application for analyzing mutations from human genetic diseases. DNA Research. 17, 197-208. [PubMed]

    • Kandasamy, K., Mohan, S. S., Raju, R., Keerthikumar, S., Kumar, G. S. S., Venugopal, A. K., Telikicherla, D., Navarro, J. D., Mathivanan, S., Pecquet, C., Gollapudi, S. K., Tattikota, S. G., Mohan, S., Padhukasahasram, H., Subbannayya, Y., Goel, R., Jacob, H. K. C., Zhong, J., Sekhar, R., Nanjappa, V., Balakrishnan, L., Subbaiah, R., Rahiman, B. A., Prasad, T. S. K., Lin, J., Houtman, J. C. D., Desiderio, S., Renauld, J., Constantinescu, S. N., Ohara, O., Hirano, T., Kubo, M., Singh, S., Khatri, P., Draghici, S., Bader, G. D., Sander, C., Leonard, W. J. and Pandey, A. (2010). NetPath: A public resource of curated signal transduction pathways. Genome Biology. 11:R3. [PubMed]

      • 2009 (Number of publications - 04)

    • Kandasamy, K., Keerthikumar, S., Raju, R., Prasad, T. S. K., Ramachandra, Y. L., Mohan, S. and Pandey, A. (2009). PathBuilder - open source software for annotating and developing pathway resources. Bioinformatics. 25, 2860-2862.[PubMed]

    • Keerthikumar, S., Bhadra, S., Kandasamy, K., Raju, R., Bhattacharyya, C., Imai, K., Ohara, O., Mohan, S. and Pandey, A. (2009). Prediction of candidate primary immunodeficiency disease genes using a support vector machine learning approach. DNA Research.16, 345-351.[PubMed]

    • Keerthikumar, S., Raju, R., Kandasamy, K., Hijikata, A., Ramabadran, S., Balakrishnan, L., Ahmed, M., Rani, S., Selvan, L. N., Somanathan, D. S., Bhattacharjee, M., Gollapudi, S., Ramachandra, Y. L., Bhadra, S., Bhattacharyya, C., Imai, K., Nonoyama, S., Kanegane, H., Miyawaki, T., Pandey, A., Ohara, O. and Mohan, S. (2009). RAPID: Resource of Asian Primary Immunodeficiency Diseases. Nucleic Acids Research. 37, D86. [PubMed]

    • Prasad, T. S. K., Goel, R., Kandasamy, K., Keerthikumar, S., Kumar, S., Mathivanan, S., Telikicherla, D., Raju, R., Shafreen, B., Venugopal, A., Balakrishnan, L., Marimuthu, A., Banerjee, S., Somanathan, D. S., Sebastian, A., Rani, S., Ray, S., Kishore, C. J. H., Kanth, S., Ahmed, M., Kashyap, M., Mahmood, R., Ramachandra, Y. L., Krishna, V., Rahiman, A. B., Mohan, S., Ranganathan, P., Ramabadran, S., Chaerkady, R. and Pandey, A. (2009). Human Protein Reference Database - 2009 update. Nucleic Acids Research. 37, D767-D772. [PubMed]

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    Associations
    • Reviewer - Nature Communications,Proteomics, Database, DNA Research, Scientific Reports, Journal of Proteomics in Bioinformatics

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